IL_4V61_192

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUGGAAGGCGAAGAAG*CGAGCCAUCAGUGAGAUACCAC

Length

38 nucleotides

Bulged bases

4V61|1|BA|A|2140, 4V61|1|BA|G|2144, 4V61|1|BA|A|2145, 4V61|1|BA|A|2146, 4V61|1|BA|G|2147, 4V61|1|BA|A|2148, 4V61|1|BA|A|2172, 4V61|1|BA|G|2173, 4V61|1|BA|U|2186, 4V61|1|BA|A|2187

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|G|2135
4V61|1|BA|U|2136
4V61|1|BA|G|2137
4V61|1|BA|G|2138
4V61|1|BA|A|2139
4V61|1|BA|A|2140
4V61|1|BA|G|2141
4V61|1|BA|G|2142
4V61|1|BA|C|2143
4V61|1|BA|G|2144
4V61|1|BA|A|2145
4V61|1|BA|A|2146
4V61|1|BA|G|2147
4V61|1|BA|A|2148
4V61|1|BA|A|2149
4V61|1|BA|G|2150
*
4V61|1|BA|C|2170
4V61|1|BA|G|2171
4V61|1|BA|A|2172
4V61|1|BA|G|2173
4V61|1|BA|C|2174
4V61|1|BA|C|2175
4V61|1|BA|A|2176
4V61|1|BA|U|2177
4V61|1|BA|C|2178
4V61|1|BA|A|2179
4V61|1|BA|G|2180
4V61|1|BA|U|2181
4V61|1|BA|G|2182
4V61|1|BA|A|2183
4V61|1|BA|G|2184
4V61|1|BA|A|2185
4V61|1|BA|U|2186
4V61|1|BA|A|2187
4V61|1|BA|C|2188
4V61|1|BA|C|2189
4V61|1|BA|A|2190
4V61|1|BA|C|2191

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

Ribosomal Protein L1