IL_4V61_195

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUCGG*CCUCGAGUGCAAAGGCAGAAG

Length

26 nucleotides

Bulged bases

4V61|1|BA|U|2336, 4V61|1|BA|C|2337, 4V61|1|BA|A|2350, 4V61|1|BA|G|2351, 4V61|1|BA|A|2353

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|C|2312
4V61|1|BA|U|2313
4V61|1|BA|C|2314
4V61|1|BA|G|2315
4V61|1|BA|G|2316
*
4V61|1|BA|C|2334
4V61|1|BA|C|2335
4V61|1|BA|U|2336
4V61|1|BA|C|2337
4V61|1|BA|G|2338
4V61|1|BA|A|2339
4V61|1|BA|G|2340
4V61|1|BA|U|2341
4V61|1|BA|G|2342
4V61|1|BA|C|2343
4V61|1|BA|A|2344
4V61|1|BA|A|2345
4V61|1|BA|A|2346
4V61|1|BA|G|2347
4V61|1|BA|G|2348
4V61|1|BA|C|2349
4V61|1|BA|A|2350
4V61|1|BA|G|2351
4V61|1|BA|A|2352
4V61|1|BA|A|2353
4V61|1|BA|G|2354

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BH

Ribosomal Protein L5

Chain BQ

Ribosomal Protein L18

Chain BX

Ribosomal Protein L27