IL_4V61_198

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCAAGA*UCGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_198 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3995

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V61|1|BA|C|2483
4V61|1|BA|C|2484
4V61|1|BA|A|2485
4V61|1|BA|A|2486
4V61|1|BA|G|2487
4V61|1|BA|A|2488
*
4V61|1|BA|U|2496
4V61|1|BA|C|2497
4V61|1|BA|G|2498
4V61|1|BA|A|2499
4V61|1|BA|C|2500
4V61|1|BA|G|2501

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Ribosomal Protein L36

Chain BO

Ribosomal Protein L16