IL_4V61_200

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAACGU*ACAGUUC

Length

13 nucleotides

Bulged bases

4V61|1|BA|A|2619

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_200 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3567

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V61|1|BA|G|2605
4V61|1|BA|A|2606
4V61|1|BA|A|2607
4V61|1|BA|C|2608
4V61|1|BA|G|2609
4V61|1|BA|U|2610
*
4V61|1|BA|A|2617
4V61|1|BA|C|2618
4V61|1|BA|A|2619
4V61|1|BA|G|2620
4V61|1|BA|U|2621
4V61|1|BA|U|2622
4V61|1|BA|C|2623

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2