Loop IL_4V61

3D structure

PDB id: 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.4 Å

Loop

Sequence: UCACGGCGAGACGAGCCGUUUAUCAUUACGAUAGG*UCCUAACAGA
Length: 45 nucleotides
Bulged bases: 4V61|1|BC|G|13, 4V61|1|BC|U|26, 4V61|1|BC|U|28, 4V61|1|BC|U|32, 4V61|1|BC|A|33, 4V61|1|BC|C|34, 4V61|1|BC|G|35, 4V61|1|BC|C|85, 4V61|1|BC|A|86, 4V61|1|BC|G|87
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V61|1|BC|U|6
4V61|1|BC|C|7
4V61|1|BC|A|8
4V61|1|BC|C|9
4V61|1|BC|G|10
4V61|1|BC|G|11
4V61|1|BC|C|12
4V61|1|BC|G|13
4V61|1|BC|A|14
4V61|1|BC|G|15
4V61|1|BC|A|16
4V61|1|BC|C|17
4V61|1|BC|G|18
4V61|1|BC|A|19
4V61|1|BC|G|20
4V61|1|BC|C|21
4V61|1|BC|C|22
4V61|1|BC|G|23
4V61|1|BC|U|24
4V61|1|BC|U|25
4V61|1|BC|U|26
4V61|1|BC|A|27
4V61|1|BC|U|28
4V61|1|BC|C|29
4V61|1|BC|A|30
4V61|1|BC|U|31
4V61|1|BC|U|32
4V61|1|BC|A|33
4V61|1|BC|C|34
4V61|1|BC|G|35
4V61|1|BC|A|36
4V61|1|BC|U|37
4V61|1|BC|A|38
4V61|1|BC|G|39
4V61|1|BC|G|40
*
4V61|1|BC|U|79
4V61|1|BC|C|80
4V61|1|BC|C|81
4V61|1|BC|U|82
4V61|1|BC|A|83
4V61|1|BC|A|84
4V61|1|BC|C|85
4V61|1|BC|A|86
4V61|1|BC|G|87
4V61|1|BC|A|88

Current chains

Chain BC: 4.8S rRNA

Nearby chains

Chain B2: Ribosomal Protein L32
Chain BA: Large subunit ribosomal RNA; LSU rRNA
Chain BF: Ribosomal Protein L3
Chain BP: Ribosomal Protein L17
Chain BR: Ribosomal Protein L19

IL_4V61_205