IL_4V63_034

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V63_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.086

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V63|1|AA|G|887
4V63|1|AA|G|888
4V63|1|AA|A|889
4V63|1|AA|G|890
4V63|1|AA|U|891
4V63|1|AA|A|892
4V63|1|AA|C|893
4V63|1|AA|G|894
*
4V63|1|AA|U|905
4V63|1|AA|G|906
4V63|1|AA|A|907
4V63|1|AA|A|908
4V63|1|AA|A|909
4V63|1|AA|C|910

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AL

30S ribosomal protein S12