IL_4V63_185

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CCCC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V63_185 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2438

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

4V63|1|CA|C|136
4V63|1|CA|C|136|||A
4V63|1|CA|C|136|||B
4V63|1|CA|C|137
*
4V63|1|CA|G|226
4V63|1|CA|G|227

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CU

30S ribosomal protein Thx