IL_4V63_186

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V63|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V63_186 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1372

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V63|1|CA|G|148
4V63|1|CA|A|149
4V63|1|CA|C|150
4V63|1|CA|A|151
4V63|1|CA|A|152
4V63|1|CA|C|153
*
4V63|1|CA|G|168
4V63|1|CA|C|169
4V63|1|CA|U|170
4V63|1|CA|A|171
4V63|1|CA|A|172
4V63|1|CA|U|173
4V63|1|CA|C|174

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CT

30S ribosomal protein S20