IL_4V63_230

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V63|1|CA|C|1400, 4V63|1|CA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V63_230 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1939

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V63|1|CA|C|1399
4V63|1|CA|C|1400
4V63|1|CA|G|1401
*
4V63|1|CA|C|1501
4V63|1|CA|A|1502
4V63|1|CA|A|1503
4V63|1|CA|G|1504

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CV

mRNA

Chain CX

Peptide chain release factor 1

Chain CY

Transfer RNA; tRNA