IL_4V64_092

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_092 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.122

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V64|1|BB|U|703
4V64|1|BB|G|704
4V64|1|BB|A|705
4V64|1|BB|A|706
4V64|1|BB|G|707
*
4V64|1|BB|U|724
4V64|1|BB|G|725
4V64|1|BB|G|726
4V64|1|BB|A|727
4V64|1|BB|G|728

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2