IL_4V64_174

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_174 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0896

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V64|1|BB|G|2737
4V64|1|BB|A|2738
4V64|1|BB|U|2739
4V64|1|BB|A|2740
4V64|1|BB|A|2741
4V64|1|BB|G|2742
*
4V64|1|BB|C|2762
4V64|1|BB|G|2763
4V64|1|BB|A|2764
4V64|1|BB|A|2765
4V64|1|BB|A|2766
4V64|1|BB|C|2767

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13