IL_4V64_192

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V64|1|CA|U|244, 4V64|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_192 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1087

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V64|1|CA|G|242
4V64|1|CA|A|243
4V64|1|CA|U|244
4V64|1|CA|U|245
4V64|1|CA|A|246
4V64|1|CA|G|247
*
4V64|1|CA|C|277
4V64|1|CA|G|278
4V64|1|CA|A|279
4V64|1|CA|C|280
4V64|1|CA|G|281
4V64|1|CA|A|282
4V64|1|CA|U|283
4V64|1|CA|C|284

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17