IL_4V64_235

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4V64|1|CA|A|1257, 4V64|1|CA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_235 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1737

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V64|1|CA|G|1255
4V64|1|CA|A|1256
4V64|1|CA|A|1257
4V64|1|CA|G|1258
*
4V64|1|CA|C|1277
4V64|1|CA|G|1278
4V64|1|CA|G|1279
4V64|1|CA|A|1280
4V64|1|CA|C|1281
4V64|1|CA|C|1282

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14