IL_4V64_258

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_258 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0916

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V64|1|DB|C|239
4V64|1|DB|C|240
4V64|1|DB|A|241
4V64|1|DB|G|242
4V64|1|DB|U|243
4V64|1|DB|A|244
4V64|1|DB|G|245
*
4V64|1|DB|C|253
4V64|1|DB|G|254
4V64|1|DB|A|255
4V64|1|DB|A|256
4V64|1|DB|C|257
4V64|1|DB|G|258

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15