3D structure

PDB id
4V64 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GAAG*CC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V64_321 not in the Motif Atlas
Homologous match to IL_7RQB_073
Geometric discrepancy: 0.1679
The information below is about IL_7RQB_073
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_88739.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

4V64|1|DB|G|1846
4V64|1|DB|A|1847
4V64|1|DB|A|1848
4V64|1|DB|G|1849
*
4V64|1|DB|C|1893
4V64|1|DB|C|1894

Current chains

Chain DB
23S ribosomal RNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain DC
50S ribosomal protein L2

Coloring options:


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