IL_4V65_005

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AGGA*UUGCU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_005 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3414

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_40017.1

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V65|1|A1|A|74
4V65|1|A1|G|75
4V65|1|A1|G|76
4V65|1|A1|A|77
*
4V65|1|A1|U|92
4V65|1|A1|U|93
4V65|1|A1|G|94
4V65|1|A1|C|95
4V65|1|A1|U|96

Current chains

Chain A1

16S rRNA

Nearby chains