IL_4V65_012

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UAGUAG*CUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_012 not in the Motif Atlas

Homologous match to IL_6CZR_357

Geometric discrepancy: 0.3508

The information below is about IL_6CZR_357

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|A1|U|249
4V65|1|A1|A|250
4V65|1|A1|G|251
4V65|1|A1|U|252
4V65|1|A1|A|253
4V65|1|A1|G|254
*
4V65|1|A1|C|272
4V65|1|A1|U|273
4V65|1|A1|A|274
4V65|1|A1|G|275

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AJ

30S ribosomal protein S17