IL_4V65_021

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AAG*CU

Length

5 nucleotides

Bulged bases

4V65|1|A1|A|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_021 not in the Motif Atlas

Geometric match to IL_5FJC_001

Geometric discrepancy: 0.3968

The information below is about IL_5FJC_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V65|1|A1|A|460
4V65|1|A1|A|461
4V65|1|A1|G|462
*
4V65|1|A1|C|470
4V65|1|A1|U|471

Current chains

Chain A1

16S rRNA

Nearby chains