IL_4V65_044

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_044 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2705

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V65|1|A1|C|1259
4V65|1|A1|G|1260
4V65|1|A1|A|1261
4V65|1|A1|C|1262
4V65|1|A1|C|1263
*
4V65|1|A1|G|1272
4V65|1|A1|C|1273
4V65|1|A1|A|1274
4V65|1|A1|A|1275
4V65|1|A1|G|1276

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S14

Chain AL

30S ribosomal protein S19