IL_4V65_053

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCA*UGAC

Length

7 nucleotides

Bulged bases

4V65|1|BB|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_053 not in the Motif Atlas

Geometric match to IL_7ECO_006

Geometric discrepancy: 0.3273

The information below is about IL_7ECO_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V65|1|BB|G|36
4V65|1|BB|C|37
4V65|1|BB|A|38
*
4V65|1|BB|U|441
4V65|1|BB|G|442
4V65|1|BB|A|443
4V65|1|BB|C|444

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L4

Chain BV

50S ribosomal protein L34