IL_4V65_061

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_061 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4252

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V65|1|BB|C|274
4V65|1|BB|C|275
4V65|1|BB|U|276
4V65|1|BB|G|277
4V65|1|BB|A|278
4V65|1|BB|A|279
4V65|1|BB|U|280
4V65|1|BB|C|281
*
4V65|1|BB|G|359
4V65|1|BB|U|360
4V65|1|BB|G|361
4V65|1|BB|A|362
4V65|1|BB|G|363

Current chains

Chain BB

23S rRNA

Nearby chains