IL_4V65_068

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4V65|1|BB|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_068 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.4656

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V65|1|BB|A|844
4V65|1|BB|A|845
4V65|1|BB|U|846
4V65|1|BB|U|847
4V65|1|BB|C|848
*
4V65|1|BB|G|930
4V65|1|BB|U|931
4V65|1|BB|U|932
4V65|1|BB|A|933
4V65|1|BB|U|934

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L30