IL_4V65_079

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUAAGUGGGAAACG*CGGAAGAUGUAACGGGGCUAAAC

Length

38 nucleotides

Bulged bases

4V65|1|BB|A|1127, 4V65|1|BB|U|1130, 4V65|1|BB|U|1132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|1017
4V65|1|BB|U|1018
4V65|1|BB|U|1019
4V65|1|BB|A|1020
4V65|1|BB|A|1021
4V65|1|BB|G|1022
4V65|1|BB|U|1023
4V65|1|BB|G|1024
4V65|1|BB|G|1025
4V65|1|BB|G|1026
4V65|1|BB|A|1027
4V65|1|BB|A|1028
4V65|1|BB|A|1029
4V65|1|BB|C|1030
4V65|1|BB|G|1031
*
4V65|1|BB|C|1123
4V65|1|BB|G|1124
4V65|1|BB|G|1125
4V65|1|BB|A|1126
4V65|1|BB|A|1127
4V65|1|BB|G|1128
4V65|1|BB|A|1129
4V65|1|BB|U|1130
4V65|1|BB|G|1131
4V65|1|BB|U|1132
4V65|1|BB|A|1133
4V65|1|BB|A|1134
4V65|1|BB|C|1135
4V65|1|BB|G|1136
4V65|1|BB|G|1137
4V65|1|BB|G|1138
4V65|1|BB|G|1139
4V65|1|BB|C|1140
4V65|1|BB|U|1141
4V65|1|BB|A|1142
4V65|1|BB|A|1143
4V65|1|BB|A|1144
4V65|1|BB|C|1145

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain B6

50S ribosomal protein L13

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L16

Chain BX

50S ribosomal protein L36

Chain BY

50S ribosomal protein L3