IL_4V65_097

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAG*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_097 not in the Motif Atlas

Geometric match to IL_5TBW_375

Geometric discrepancy: 0.3354

The information below is about IL_5TBW_375

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4V65|1|BB|G|1649
4V65|1|BB|A|1650
4V65|1|BB|G|1651
*
4V65|1|BB|U|2007
4V65|1|BB|C|2008

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L17

Chain BL

50S ribosomal protein L22

Chain BT

50S ribosomal protein L32