IL_4V65_110

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUG*UGC

Length

7 nucleotides

Bulged bases

4V65|1|BB|U|2203

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_110 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.3506

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V65|1|BB|G|2201
4V65|1|BB|U|2202
4V65|1|BB|U|2203
4V65|1|BB|G|2204
*
4V65|1|BB|U|2220
4V65|1|BB|G|2221
4V65|1|BB|C|2222

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L2

Chain BS

50S ribosomal protein L31