IL_4V65_111

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGCUAAUC*GAGGUUAGUGCAAUGGCAUAAGCC

Length

32 nucleotides

Bulged bases

4V65|1|BB|U|2320, 4V65|1|BB|G|2325, 4V65|1|BB|C|2332, 4V65|1|BB|U|2334

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|2293
4V65|1|BB|G|2294
4V65|1|BB|C|2295
4V65|1|BB|U|2296
4V65|1|BB|A|2297
4V65|1|BB|A|2298
4V65|1|BB|U|2299
4V65|1|BB|C|2300
*
4V65|1|BB|G|2316
4V65|1|BB|A|2317
4V65|1|BB|G|2318
4V65|1|BB|G|2319
4V65|1|BB|U|2320
4V65|1|BB|U|2321
4V65|1|BB|A|2322
4V65|1|BB|G|2323
4V65|1|BB|U|2324
4V65|1|BB|G|2325
4V65|1|BB|C|2326
4V65|1|BB|A|2327
4V65|1|BB|A|2328
4V65|1|BB|U|2329
4V65|1|BB|G|2330
4V65|1|BB|G|2331
4V65|1|BB|C|2332
4V65|1|BB|A|2333
4V65|1|BB|U|2334
4V65|1|BB|A|2335
4V65|1|BB|A|2336
4V65|1|BB|G|2337
4V65|1|BB|C|2338
4V65|1|BB|C|2339

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AP

Transfer RNA; tRNA

Chain B2

50S ribosomal protein L5

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BH

50S ribosomal protein L18

Chain BP

50S ribosomal protein L27