IL_4V65_126

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_126 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.4801

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V65|1|BB|U|2847
4V65|1|BB|G|2848
4V65|1|BB|U|2849
4V65|1|BB|A|2850
4V65|1|BB|A|2851
4V65|1|BB|G|2852
*
4V65|1|BB|U|2865
4V65|1|BB|U|2866
4V65|1|BB|G|2867
4V65|1|BB|A|2868
4V65|1|BB|G|2869

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L17

Chain BI

50S ribosomal protein L19