IL_4V65_131

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_131 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.2573

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V65|1|A1|G|669
4V65|1|A1|G|670
4V65|1|A1|G|671
*
4V65|1|A1|C|735
4V65|1|A1|C|736
4V65|1|A1|C|737

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AH

30S ribosomal protein S15

Chain AK

30S ribosomal protein S18

Chain AT

30S ribosomal protein S6