IL_4V65_140

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCAUGGGAGUG*CAUGACUGGGG

Length

22 nucleotides

Bulged bases

4V65|1|A1|A|1418, 4V65|1|A1|U|1481, 4V65|1|A1|G|1482, 4V65|1|A1|A|1483, 4V65|1|A1|C|1484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|A1|C|1411
4V65|1|A1|C|1412
4V65|1|A1|A|1413
4V65|1|A1|U|1414
4V65|1|A1|G|1415
4V65|1|A1|G|1416
4V65|1|A1|G|1417
4V65|1|A1|A|1418
4V65|1|A1|G|1419
4V65|1|A1|U|1420
4V65|1|A1|G|1421
*
4V65|1|A1|C|1479
4V65|1|A1|A|1480
4V65|1|A1|U|1481
4V65|1|A1|G|1482
4V65|1|A1|A|1483
4V65|1|A1|C|1484
4V65|1|A1|U|1485
4V65|1|A1|G|1486
4V65|1|A1|G|1487
4V65|1|A1|G|1488
4V65|1|A1|G|1489

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S ribosomal protein L14