IL_4V65_155

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAUCCUGGG*CCAAGGGUAUGGCUGUUCGCCAUUUAAAG

Length

38 nucleotides

Bulged bases

4V65|1|BB|A|2518, 4V65|1|BB|G|2543, 4V65|1|BB|U|2563

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|2517
4V65|1|BB|A|2518
4V65|1|BB|U|2519
4V65|1|BB|C|2520
4V65|1|BB|C|2521
4V65|1|BB|U|2522
4V65|1|BB|G|2523
4V65|1|BB|G|2524
4V65|1|BB|G|2525
*
4V65|1|BB|C|2539
4V65|1|BB|C|2540
4V65|1|BB|A|2541
4V65|1|BB|A|2542
4V65|1|BB|G|2543
4V65|1|BB|G|2544
4V65|1|BB|G|2545
4V65|1|BB|U|2546
4V65|1|BB|A|2547
4V65|1|BB|U|2548
4V65|1|BB|G|2549
4V65|1|BB|G|2550
4V65|1|BB|C|2551
4V65|1|BB|U|2552
4V65|1|BB|G|2553
4V65|1|BB|U|2554
4V65|1|BB|U|2555
4V65|1|BB|C|2556
4V65|1|BB|G|2557
4V65|1|BB|C|2558
4V65|1|BB|C|2559
4V65|1|BB|A|2560
4V65|1|BB|U|2561
4V65|1|BB|U|2562
4V65|1|BB|U|2563
4V65|1|BB|A|2564
4V65|1|BB|A|2565
4V65|1|BB|A|2566
4V65|1|BB|G|2567

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain BD

50S ribosomal protein L14

Chain BX

50S ribosomal protein L36