IL_4V65_179

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAAGGUUAAUUGAUG*UUGAUCGAAGCCC

Length

28 nucleotides

Bulged bases

4V65|1|BB|G|1884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|1846
4V65|1|BB|A|1847
4V65|1|BB|A|1848
4V65|1|BB|G|1849
4V65|1|BB|G|1850
4V65|1|BB|U|1851
4V65|1|BB|U|1852
4V65|1|BB|A|1853
4V65|1|BB|A|1854
4V65|1|BB|U|1855
4V65|1|BB|U|1856
4V65|1|BB|G|1857
4V65|1|BB|A|1858
4V65|1|BB|U|1859
4V65|1|BB|G|1860
*
4V65|1|BB|U|1882
4V65|1|BB|U|1883
4V65|1|BB|G|1884
4V65|1|BB|A|1885
4V65|1|BB|U|1886
4V65|1|BB|C|1887
4V65|1|BB|G|1888
4V65|1|BB|A|1889
4V65|1|BB|A|1890
4V65|1|BB|G|1891
4V65|1|BB|C|1892
4V65|1|BB|C|1893
4V65|1|BB|C|1894

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain AE

Transfer RNA; tRNA

Chain BN

50S ribosomal protein L2