IL_4V66_001

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

4V66|1|A1|A|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_001 not in the Motif Atlas

Homologous match to IL_6CZR_114

Geometric discrepancy: 0.3542

The information below is about IL_6CZR_114

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V66|1|A1|A|44
4V66|1|A1|G|45
*
4V66|1|A1|C|396
4V66|1|A1|A|397
4V66|1|A1|U|398

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S16