IL_4V66_031

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_031 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.292

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V66|1|A1|C|779
4V66|1|A1|A|780
4V66|1|A1|A|781
4V66|1|A1|A|782
4V66|1|A1|C|783
*
4V66|1|A1|G|799
4V66|1|A1|G|800
4V66|1|A1|U|801
4V66|1|A1|A|802
4V66|1|A1|G|803

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S11

Chain AQ

30S ribosomal protein S21

Chain BB

Large subunit ribosomal RNA; LSU rRNA