IL_4V66_070

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAG*CUGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_070 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3351

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4V66|1|BB|G|862
4V66|1|BB|A|863
4V66|1|BB|G|864
*
4V66|1|BB|C|912
4V66|1|BB|U|913
4V66|1|BB|G|914
4V66|1|BB|C|915

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L16