IL_4V66_079

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V66|1|BB|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_079 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.2924

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V66|1|BB|C|1043
4V66|1|BB|C|1044
4V66|1|BB|C|1045
4V66|1|BB|A|1046
4V66|1|BB|G|1047
4V66|1|BB|A|1048
4V66|1|BB|C|1049
4V66|1|BB|A|1050
4V66|1|BB|G|1051
*
4V66|1|BB|U|1108
4V66|1|BB|C|1109
4V66|1|BB|G|1110
4V66|1|BB|A|1111
4V66|1|BB|G|1112

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6