IL_4V66_098

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

4V66|1|BB|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_098 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.3328

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V66|1|BB|U|1712
4V66|1|BB|A|1713
4V66|1|BB|U|1714
4V66|1|BB|G|1715
4V66|1|BB|U|1716
4V66|1|BB|A|1717
4V66|1|BB|G|1718
*
4V66|1|BB|U|1742
4V66|1|BB|G|1743
4V66|1|BB|A|1744
4V66|1|BB|A|1745
4V66|1|BB|A|1746

Current chains

Chain BB

23S rRNA

Nearby chains