IL_4V66_102

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_102 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.332

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V66|1|BB|G|1767
4V66|1|BB|C|1768
*
4V66|1|BB|G|1984
4V66|1|BB|C|1985
4V66|1|BB|C|1986

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA