IL_4V66_192

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGCUAAUC*GAGGUUAGUGCAAUGGCAUAAGCC

Length

32 nucleotides

Bulged bases

4V66|1|BB|G|2318, 4V66|1|BB|U|2320, 4V66|1|BB|U|2321, 4V66|1|BB|G|2323, 4V66|1|BB|G|2325, 4V66|1|BB|C|2332, 4V66|1|BB|U|2334

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V66|1|BB|G|2293
4V66|1|BB|G|2294
4V66|1|BB|C|2295
4V66|1|BB|U|2296
4V66|1|BB|A|2297
4V66|1|BB|A|2298
4V66|1|BB|U|2299
4V66|1|BB|C|2300
*
4V66|1|BB|G|2316
4V66|1|BB|A|2317
4V66|1|BB|G|2318
4V66|1|BB|G|2319
4V66|1|BB|U|2320
4V66|1|BB|U|2321
4V66|1|BB|A|2322
4V66|1|BB|G|2323
4V66|1|BB|U|2324
4V66|1|BB|G|2325
4V66|1|BB|C|2326
4V66|1|BB|A|2327
4V66|1|BB|A|2328
4V66|1|BB|U|2329
4V66|1|BB|G|2330
4V66|1|BB|G|2331
4V66|1|BB|C|2332
4V66|1|BB|A|2333
4V66|1|BB|U|2334
4V66|1|BB|A|2335
4V66|1|BB|A|2336
4V66|1|BB|G|2337
4V66|1|BB|C|2338
4V66|1|BB|C|2339

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AP

Transfer RNA; tRNA

Chain B2

50S ribosomal protein L5

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BH

50S ribosomal protein L18

Chain BP

50S ribosomal protein L27