IL_4V67_019

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_019 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1042

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V67|1|AA|G|450
4V67|1|AA|A|451
4V67|1|AA|A|452
4V67|1|AA|A|453
4V67|1|AA|C|454
4V67|1|AA|C|455
*
4V67|1|AA|G|477
4V67|1|AA|A|478
4V67|1|AA|C|479
4V67|1|AA|U|480
4V67|1|AA|G|481
4V67|1|AA|A|482
4V67|1|AA|C|483

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain DI

50S ribosomal protein L9