IL_4V67_031

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V67|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_031 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0948

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V67|1|AA|G|683
4V67|1|AA|A|684
4V67|1|AA|G|685
4V67|1|AA|U|686
4V67|1|AA|A|687
4V67|1|AA|G|688
*
4V67|1|AA|C|699
4V67|1|AA|G|700
4V67|1|AA|C|701
4V67|1|AA|A|702
4V67|1|AA|G|703
4V67|1|AA|A|704
4V67|1|AA|U|705
4V67|1|AA|A|706
4V67|1|AA|C|707

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA