IL_4V67_034

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0832

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V67|1|AA|G|887
4V67|1|AA|G|888
4V67|1|AA|A|889
4V67|1|AA|G|890
4V67|1|AA|U|891
4V67|1|AA|A|892
4V67|1|AA|C|893
4V67|1|AA|G|894
*
4V67|1|AA|U|905
4V67|1|AA|G|906
4V67|1|AA|A|907
4V67|1|AA|A|908
4V67|1|AA|A|909
4V67|1|AA|C|910

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17