IL_4V67_053

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V67|1|AA|C|1400, 4V67|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_053 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1283

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V67|1|AA|C|1399
4V67|1|AA|C|1400
4V67|1|AA|G|1401
*
4V67|1|AA|C|1501
4V67|1|AA|A|1502
4V67|1|AA|A|1503
4V67|1|AA|G|1504

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AV

MRNA

Chain AX

Bacterial peptide chain release factor 2 (RF-2)

Chain AY

Transfer RNA; tRNA