IL_4V67_100

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V67|1|BA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_100 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1285

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V67|1|BA|C|994
4V67|1|BA|C|995
4V67|1|BA|A|996
*
4V67|1|BA|U|1159
4V67|1|BA|G|1160

Current chains

Chain BA

23S RRNA

Nearby chains

Chain B3

50S ribosomal protein L30

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21