IL_4V67_130

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V67|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_130 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0914

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V67|1|BA|A|1669
4V67|1|BA|C|1670
4V67|1|BA|U|1671
4V67|1|BA|C|1672
4V67|1|BA|U|1673
4V67|1|BA|G|1674
*
4V67|1|BA|C|1990
4V67|1|BA|U|1991
4V67|1|BA|G|1992
4V67|1|BA|U|1993

Current chains

Chain BA

23S RRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14