IL_4V67_149

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_149 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3075

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4V67|1|BA|G|2124
4V67|1|BA|G|2125
4V67|1|BA|A|2126
4V67|1|BA|G|2127
*
4V67|1|BA|C|2161
4V67|1|BA|G|2162
4V67|1|BA|C|2163
4V67|1|BA|C|2164
4V67|1|BA|G|2165
4V67|1|BA|G|2166
4V67|1|BA|U|2167
4V67|1|BA|G|2168
4V67|1|BA|A|2169
4V67|1|BA|A|2170
4V67|1|BA|A|2171
4V67|1|BA|U|2172
4V67|1|BA|A|2173
4V67|1|BA|C|2174

Current chains

Chain BA

23S RRNA

Nearby chains

Chain AZ

Transfer RNA; tRNA