IL_4V67_179

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

4V67|1|CA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_179 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.103

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

4V67|1|CA|G|44
4V67|1|CA|U|45
*
4V67|1|CA|G|396
4V67|1|CA|A|397
4V67|1|CA|C|398

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CP

30S ribosomal protein S16