IL_4V67_203

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAGAC*GGGGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_203 not in the Motif Atlas

Homologous match to IL_4LFB_026

Geometric discrepancy: 0.1489

The information below is about IL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V67|1|CA|U|605
4V67|1|CA|G|606
4V67|1|CA|A|607
4V67|1|CA|A|608
4V67|1|CA|A|609
4V67|1|CA|G|610
4V67|1|CA|A|611
4V67|1|CA|C|612
*
4V67|1|CA|G|628
4V67|1|CA|G|629
4V67|1|CA|G|630
4V67|1|CA|G|631
4V67|1|CA|A|632
4V67|1|CA|G|633

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CH

30S ribosomal protein S8

Chain CP

30S ribosomal protein S16