IL_4V67_217

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V67|1|CA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_217 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1271

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4V67|1|CA|G|1048
4V67|1|CA|U|1049
4V67|1|CA|G|1050
*
4V67|1|CA|C|1208
4V67|1|CA|C|1209

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CN

30S ribosomal protein S14

Chain CX

Bacterial peptide chain release factor 2 (RF-2)