IL_4V67_238

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_238 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.4454

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V67|1|CA|C|1440
4V67|1|CA|G|1441
4V67|1|CA|G|1442
4V67|1|CA|G|1443
4V67|1|CA|A|1446
4V67|1|CA|G|1447
*
4V67|1|CA|C|1459
4V67|1|CA|A|1460
4V67|1|CA|G|1461

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DT

50S ribosomal protein L19