IL_4V67_286

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V67|1|DA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V67_286 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2452

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4V67|1|DA|G|1087
4V67|1|DA|A|1088
4V67|1|DA|G|1089
4V67|1|DA|U|1090
4V67|1|DA|G|1091
*
4V67|1|DA|C|1100
4V67|1|DA|U|1101
4V67|1|DA|C|1102

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DK

50S ribosomal protein L11